multiplicity.doc >>>9/16/1998
MULTIPLICITY ANALYSES
(ARX Spectrometers)
I. Background
A. Various methods abound for the determination of the number of protons directly bonded to an X-nucleus, i.e. its multiplicity. The most useful methods involve polarization transfer which can yield significant sensitivity enhancement compared to methods that do not. Since the most commonly observed X-nucleus is 13C, the rest of this write-up will refer to 13C but is generally applicable to other X-nuclei.
- Polarization transfer always involves high power pulses of both 13C and 1H and delays related to the inverse of the 1-bond carbon-hydrogen J coupling constant, 1JC-H. Implementation is straightforward starting from parameters appropriate for routine 13C observation because many of the parameters are already set correctly.
C. Parameters that should already be set correctly in the default parameters are:
- The 13C 90 degree pulse time and corresponding power level
- The 1H pulse 90 degree pulse time and power level needed for composite pulse decoupling
D. The parameters that must be changed (or at least checked) compared to those used for routine observation are:
- The name of the pulse program
- The 90 degree pulse time and corresponding power level for the high power 1H pulse -These parameters will be listed in the spectrometer notebook. (In the case of 13C observation, even these parameters will probably be correct in the default parameter files, but you must check since they are not actually used for routine observation.)
- 1
JC-H
E. It is always a good idea to have a hard copy of the pulse program you are using. To obtain one, type edpul <pulse program name>. The pulse program will be displayed. Select list to obtain a hard copy, then OK to exit from the display.
II. DEPT (Distortionless Enhancement by Polarization Transfer)
- The full DEPT experiment involves three different experiments. These are usually called DEPT45, DEPT90, and DEPT135 because the final high power proton pulse is a 45 degree, a 90 degree, and a 135 degree pulse, respectively. The results of these experiments are:
1. All quaternary carbons (and deuterated solvent signals) are absent from all DEPT experiments.
2. The DEPT45 produces positive signals for all CH, CH2, and CH3 carbons.
3. The DEPT90 produces positive signals for CH carbons; all others are absent.
4. The DEPT135 produces positive signals for CH and CH3 carbons and negative signals for CH2 carbons.
- The DEPT45 is used to determine the phase to be used for the rest of the DEPT spectra. The phase constants of the DEPT45 are applied to the DEPT90 and DEPT135 spectra with the pk command (usually in the combined efp command).
C. If the multiplicities of some of the signals are already known from previous structural information, one can in principal acquire only the DEPT135 and correctly phase the known signals. The unknown signals should then be either positive or negative depending on their multiplicities. While this is not complete information, one can ususally distinguish CH's from CH3's on the basis of the chemical shifts.
D. To manually acquire a DEPT spectrum:
- From parameters for a routine 13C spectrum, make a new data set.
- Change the pulse program name to dept45.js, dept90.js or dept135.js as appropriate.
- Set the parameter p3 to the 90 deg pulse time for 1H high power pulse and the parameter dl0 (the second character is the letter l, not the number 1) to its corresponding power level (expressed as attenuation from full power), usually 1.00 db. (See spectrometer notebook.)
- Set CNST2 to the one bond J value. A value of 135 to 145 Hz is a reasonable choice for 1JC-H .
- Type rga to determine the appropriate receiver gain. Do this from the DEPT45 and use the same value for the DEPT90 and DEPT135. If you plan to acquire only the DEPT135, do the rga from DEPT135 parameters.
- Full phase cycling requires that NS be a multiple of 32. If fewer scans are required, it is best to use the usual multiple of 8. At least 2 dummy scans (DS) are probably a good idea.
- Once the parameters are set, start the acquisition with the usual zg command.
- When processing the data, phase the DEPT45 spectrum with all positive peaks. If the other parameter sets are created after the DEPT45 has been phased, the correct phase constants will be a part of the parameters of the new data set. If they were created before the correct phasing was determined, simply determine the values for the parameters, PHC0 and PHC1 and enter them into the other data sets. Then apply them to the other data sets with the efp command.
- If you have acquired your data with the same data set name but increasing expno's, a convenient way to step through the spectra is to use the dual display. Select the "button" labeled dual. A window will appear in which you must specify the name of the second data set for display. (It defaults to the next higher procno, which is not what you want, so you will have to input the correct expno and procno, then select SAVE.) In the dual display, the "buttons" on the upper left affect both spectra. The "buttons" below that area affect spectrum 1 (i.e. the one from which you entered the dual display) and the next set of "buttons" below that affect spectrum 2. Initially the spectra will be on top of each other so move them around where both can be seen well. Step through the rest of spectra by selecting the "button" labeled E ( to increment the expno).
- There is an automation routine that will acquire all the DEPT spectra and process them for you. This routine assumes that you may want to do long term signal averaging and will ask how many cycles of the entire acquisition you would like to have. The total number of scans will be NS times the number of cycles you input. To use this routine:
- From parameters for a routine 13C spectrum, type deptcyc.js. You will be asked to input all the appropriate pulse times and power levels and a J value. Most will already be correct from the default 13C parameters but check the values in the spectrometer notebook.
- If you want to stop the acquisition before all the cycles are complete, type depthalt. The data acquisition will stop at the end of the current cycle and all files will be processed.
F. There is also an automation routine that will analyze the data and produce a plot of your regular 13C spectrum with the mutiplicities on the peak labels. This routine will only work properly if the dept90 is acquired with twice as many scans as used for the dept45 and dept135 (as is the case if you use the deptcyc.js routine described above). To make use of this routine:
- The dept90 and dept135 data sets must have the same name but different experiment numbers from the 13C spectrum from which this routine is run.
- Read in the data for the 13C spectrum, then type edg. Under "edit peak labels", change "multiplicity labels" to yes, then save the menus. Type deptmult.js. A window will come up in which you define the dept90 data as the 2nd data set and the dept135 data as the 3rd data set. (This is the "edc2" window used to define the 2nd and 3rd data sets for the dual display.) You will also be asked to specify a % variation in the dept90 data. The default of 50% is probably fine if your pulse repetition rate is not too fast compared to the 1H T1 values. A plot of the 13C spectrum will now have the following on the peak labels: Q=quartet, T=triplet, D=doublet, S=singlet, U=unknown. Solvent and reference peaks should not have multiplicity labels.
III. PENDANT
A. An alternative to the DEPT135 experiment that includes the quaternary carbons (and deuterated solvent signals) is an experiment called PENDANT. Experimental set up is exactly like setting up a manual DEPT (see section IID above) except the pulse program must be set to pendant. Full phase cycle requires multiples of 8 scans. The results of the experiment are:
- CH and CH3 carbons are positive and quaternary and CH2 are negative.
- In fact, the absolute sign is arbitrary, the important point is that the signs of CH and CH3 carbons are opposite of quaternary and CH2 carbons.
B. As is the case where only the DEPT135 is run, knowledge of the multiplicity of some resonances and chemical shift arguments are needed to make complete multiplicity assignments. The presence of the deuterated solvent resonances could be a significant advantage in assigning an absolute value to the signs of the signals.
C. The PENDANT experiment appears to be somewhat more sensitive to having the J value correct than DEPT135.